Akdel, Mehmet

3 publications

ICMLW 2024 PLINDER: The Protein-Ligand Interactions Dataset and Evaluation Resource Janani Durairaj, Yusuf Adeshina, Zhonglin Cao, Xuejin Zhang, Vladas Oleinikovas, Thomas Duignan, Zachary McClure, Xavier Robin, Emanuele Rossi, Guoqing Zhou, Srimukh Prasad Veccham, Clemens Isert, Yuxing Peng, Prabindh Sundareson, Mehmet Akdel, Gabriele Corso, Hannes Stark, Zachary Wayne Carpenter, Michael M. Bronstein, Emine Kucukbenli, Torsten Schwede, Luca Naef

NeurIPSW 2023 Bending and Binding: Predicting Protein Flexibility upon Ligand Interaction Using Diffusion Models Xuejin Zhang, Tomas Geffner, Matt McPartlon, Mehmet Akdel, Dylan Abramson, Graham Holt, Alexander Goncearenco, Luca Naef, Michael Bronstein

ICMLW 2023 Reinforcement Learning-Driven Linker Design via Fast Attention-Based Point Cloud Alignment Rebecca Manuela Neeser, Mehmet Akdel, Daniel Kovtun, Luca Naef