Bunne, Charlotte

22 publications

ICLRW 2025 AI-Powered Virtual Tissues from Spatial Proteomics for Clinical Diagnostics and Biomedical Discovery Johann Wenckstern, Eeshaan Jain, Kiril Vasilev, Matteo Pariset, Andreas Wicki, Gabriele Gut, Charlotte Bunne

AISTATS 2025 Cross-Modality Matching and Prediction of Perturbation Responses with Labeled Gromov-Wasserstein Optimal Transport Jayoung Ryu, Charlotte Bunne, Luca Pinello, Aviv Regev, Romain Lopez

NeurIPS 2025 MTBBench: A Multimodal Sequential Clinical Decision-Making Benchmark in Oncology Kiril Vasilev, Alexandre Misrahi, Eeshaan Jain, Phil F Cheng, Petros Liakopoulos, Olivier Michielin, Michael Moor, Charlotte Bunne

ICLR 2025 Modeling Complex System Dynamics with Flow Matching Across Time and Conditions Martin Rohbeck, Edward De Brouwer, Charlotte Bunne, Jan-Christian Huetter, Anne Biton, Kelvin Y. Chen, Aviv Regev, Romain Lopez

ICLRW 2025 Test-Time View Selection for Multi-Modal Decision Making Eeshaan Jain, Johann Wenckstern, Benedikt von Querfurth, Charlotte Bunne

ICMLW 2024 Cross-Modality Matching and Prediction of Perturbation Responses with Labeled Gromov-Wasserstein Optimal Transport Jayoung Ryu, Romain Lopez, Charlotte Bunne, Luca Pinello, Aviv Regev

ICMLW 2024 Cross-Modality Matching and Prediction of Perturbation Responses with Labeled Gromov-Wasserstein Optimal Transport Jayoung Ryu, Romain Lopez, Charlotte Bunne, Luca Pinello, Aviv Regev

NeurIPSW 2024 Modeling Complex System Dynamics with Flow Matching Across Time and Conditions Martin Rohbeck, Charlotte Bunne, Edward De Brouwer, Jan-Christian Huetter, Anne Biton, Kelvin Y. Chen, Aviv Regev, Romain Lopez

UAI 2023 Aligned Diffusion Schrödinger Bridges Vignesh Ram Somnath, Matteo Pariset, Ya-Ping Hsieh, Maria Rodriguez Martinez, Andreas Krause, Charlotte Bunne

ICMLW 2023 Aligned Diffusion Schrödinger Bridges Vignesh Ram Somnath, Matteo Pariset, Ya-Ping Hsieh, Maria Rodriguez Martinez, Andreas Krause, Charlotte Bunne

AISTATS 2023 The Schrödinger Bridge Between Gaussian Measures Has a Closed Form Charlotte Bunne, Ya-Ping Hsieh, Marco Cuturi, Andreas Krause

NeurIPSW 2023 Transition Path Sampling with Boltzmann Generator-Based MCMC Moves Michael Plainer, Hannes Stark, Charlotte Bunne, Stephan Günnemann

NeurIPSW 2023 Transition Path Sampling with Boltzmann Generator-Based MCMC Moves Michael Plainer, Hannes Stark, Charlotte Bunne, Stephan Günnemann

ICMLW 2023 Unbalanced Diffusion Schrödinger Bridge Matteo Pariset, Ya-Ping Hsieh, Charlotte Bunne, Andreas Krause, Valentin De Bortoli

AISTATS 2022 Proximal Optimal Transport Modeling of Population Dynamics Charlotte Bunne, Laetitia Papaxanthos, Andreas Krause, Marco Cuturi

ICLR 2022 Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking Octavian-Eugen Ganea, Xinyuan Huang, Charlotte Bunne, Yatao Bian, Regina Barzilay, Tommi S. Jaakkola, Andreas Krause

NeurIPSW 2022 Neural Unbalanced Optimal Transport via Cycle-Consistent Semi-Couplings Frederike Lübeck, Charlotte Bunne, Gabriele Gut, Jacobo Sarabia del Castillo, Lucas Pelkmans, David Alvarez-Melis

NeurIPSW 2022 Neural Unbalanced Optimal Transport via Cycle-Consistent Semi-Couplings Frederike Lübeck, Charlotte Bunne, Gabriele Gut, Jacobo Sarabia del Castillo, Lucas Pelkmans, David Alvarez-Melis

NeurIPS 2022 Supervised Training of Conditional Monge Maps Charlotte Bunne, Andreas Krause, Marco Cuturi

NeurIPS 2021 Learning Graph Models for Retrosynthesis Prediction Vignesh Ram Somnath, Charlotte Bunne, Connor Coley, Andreas Krause, Regina Barzilay

NeurIPS 2021 Multi-Scale Representation Learning on Proteins Vignesh Ram Somnath, Charlotte Bunne, Andreas Krause

ICML 2019 Learning Generative Models Across Incomparable Spaces Charlotte Bunne, David Alvarez-Melis, Andreas Krause, Stefanie Jegelka