Chatterjee, Pranam

23 publications

ICLRW 2025 A Mammalian High-Throughput Assay to Screen AI-Designed Protein Degraders Lin Zhao, Aastha Pal, Tong Chen, Pranam Chatterjee

ICLRW 2025 EvoFlow-RNA: Generating and Representing Non-Coding RNA with a Language Model Sawan Patel, Fred Zhangzhi Peng, Keith Fraser, Adam David Friedman, Pranam Chatterjee, Sherwood Yao

ICLRW 2025 Gumbel-SoftMax Score and Flow Matching for Discrete Biological Sequence Generation Sophia Tang, Yinuo Zhang, Alexander Tong, Pranam Chatterjee

ICLRW 2025 MeMDLM: De Novo Membrane Protein Design with Property-Guided Discrete Diffusion Shrey Goel, Vishrut Thoutam, Edgar Mariano Marroquin, Aaron Gokaslan, Arash Firouzbakht, Sophia Vincoff, Volodymyr Kuleshov, Huong T. Kratochvil, Pranam Chatterjee

ICLRW 2025 Metalorian: De Novo Generation of Heavy Metal-Binding Peptides with Classifier-Guided Diffusion Sampling Yinuo Zhang, Divya Srijay, Pranam Chatterjee

ICLRW 2025 Path Planning for Masked Diffusion Models with Applications to Biological Sequence Generation Fred Zhangzhi Peng, Zachary Bezemek, Sawan Patel, Jarrid Rector-Brooks, Sherwood Yao, Alexander Tong, Pranam Chatterjee

ICML 2025 PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion Sophia Tang, Yinuo Zhang, Pranam Chatterjee

ICLRW 2025 PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion Sophia Tang, Yinuo Zhang, Pranam Chatterjee

ICLRW 2025 Programmable Protein Stabilization with Language Model-Derived Peptide Guides Lauren Hong, Tian Zi Wang, Divya Srijay, Howard Liu, Rio Watson, Lin Zhao, Sophia Vincoff, Leo Chen, Kseniia Kholina, Shrey Goel, Matthew DeLisa, Pranam Chatterjee

ICLRW 2025 SOAPI: Siamese-Guided Generation of Off-Target-Avoiding Protein Interactions Sophia Vincoff, Oscar Davis, Alexander Tong, Joey Bose, Pranam Chatterjee

ICLR 2025 Steering Masked Discrete Diffusion Models via Discrete Denoising Posterior Prediction Jarrid Rector-Brooks, Mohsin Hasan, Zhangzhi Peng, Cheng-Hao Liu, Sarthak Mittal, Nouha Dziri, Michael M. Bronstein, Pranam Chatterjee, Alexander Tong, Joey Bose

ICLRW 2025 Targeting Aggregating Proteins with Language Model-Designed Degraders Rio Watson, Kishan Patel, Tong Chen, Pranam Chatterjee

ICLRW 2025 moPPIt: De Novo Generation of Motif-Specific Peptide Binders via Conditional Uniform Discrete Diffusion Tong Chen, Yinuo Zhang, Zachary Quinn, Pranam Chatterjee

ICLRW 2025 muPPIt: De Novo Generation of Mutant-Specific Peptide Binders via Conditional Uniform Discrete Diffusion Tong Chen, Pranam Chatterjee

ICLRW 2024 A High-Throughput Human Display Screen to Identify Target-Specific Binder Proteins via Chimeric Antigen Receptors Lin Zhao, Aditya Mohan, Anoop P. Patel, Pranam Chatterjee

NeurIPSW 2024 AptaBLE: A Deep Learning Platform for SELEX Optimization Sawan Patel, Keith Fraser, Zhangzhi Peng, Adam D. Friedman, Owen Yao, Pranam Chatterjee, Sherwood Yao

ICMLW 2024 FusOn-pLM: A Fusion Oncoprotein-Specific Language Model via Focused Probabilistic Masking Sophia Vincoff, Shrey Goel, Kseniia Kholina, Pranam Chatterjee

NeurIPSW 2024 MeMDLM: De Novo Membrane Protein Design with Masked Discrete Diffusion Protein Language Models Shrey Goel, Vishrut Thoutam, Edgar Mariano Marroquin, Aaron Gokaslan, Arash Firouzbakht, Sophia Vincoff, Volodymyr Kuleshov, Huong T. Kratochvil, Pranam Chatterjee

ICLRW 2024 PPI-Llama2: De Novo Generation of Binding Proteins Conditioned on Target Sequence Alone Yinuo Zhang, Phil He, Ashley Hsu, Sophia Vincoff, Pranam Chatterjee

NeurIPSW 2024 PepDoRA: A Unified Peptide Language Model via Weight-Decomposed Low-Rank Adaptation Leyao Wang, Rishab Pulugurta, Pranay Vure, Yinuo Zhang, Aastha Pal, Pranam Chatterjee

ICLRW 2024 PepMLM: Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling Tianlai Chen, Sarah Pertsemlidis, Pranam Chatterjee

ICLRW 2024 Programmable Protein Stabilization with Language Model-Derived Peptide Guides Lauren Hong, Tianzheng Ye, Tian Zi Wang, Divya Srijay, Lin Zhao, Sophia Vincoff, Tianlai Chen, Matthew DeLisa, Pranam Chatterjee

NeurIPSW 2023 AMP-Diffusion: Integrating Latent Diffusion with Protein Language Models for Antimicrobial Peptide Generation Tianlai Chen, Pranay Vure, Rishab Pulugurta, Pranam Chatterjee