ML Anthology

Chen, Shaorong

6 publications

IJCAI 2025 A Comprehensive and Systematic Review for Deep Learning-Based De Novo Peptide Sequencing Jun Xia, Jingbo Zhou, Shaorong Chen, Tianze Ling, Stan Z. Li
ICLR 2025 Bridging the Gap Between Database Search and \emph{De Novo} Peptide Sequencing with SearchNovo Jun Xia, Sizhe Liu, Jingbo Zhou, Shaorong Chen, Hongxin Xiang, Zicheng Liu, Yue Liu, Stan Z. Li
ICLR 2025 ReNovo: Retrieval-Based \emph{De Novo} Mass Spectrometry Peptide Sequencing Shaorong Chen, Jun Xia, Jingbo Zhou, Lecheng Zhang, Zhangyang Gao, Bozhen Hu, Cheng Tan, Wenjie Du, Stan Z. Li
NeurIPS 2024 AdaNovo: Towards Robust \emph{De Novo} Peptide Sequencing in Proteomics Against Data Biases Jun Xia, Shaorong Chen, Jingbo Zhou, Xiaojun Shan, Wenjie Du, Zhangyang Gao, Cheng Tan, Bozhen Hu, Jiangbin Zheng, Stan Z. Li
NeurIPSW 2024 Bridging the Gap Between Database Search and \emph{De Novo} Peptide Sequencing with SearchNovo Jun Xia, Sizhe Liu, Jingbo Zhou, Shaorong Chen, Hongxin Xiang, Zicheng Liu, Yue Liu, Stan Z. Li
NeurIPS 2024 NovoBench: Benchmarking Deep Learning-Based \emph{De Novo} Sequencing Methods in Proteomics Jingbo Zhou, Shaorong Chen, Jun Xia, Sizhe Liu, Tianze Ling, Wenjie Du, Yue Liu, Jianwei Yin, Stan Z. Li