Cheng, Xingyi

11 publications

NeurIPS 2025 Protein Inverse Folding from Structure Feedback Junde Xu, Zijun Gao, Xinyi Zhou, Hujie, Xingyi Cheng, Le Song, Guangyong Chen, Pheng-Ann Heng, Jiezhong Qiu

NeurIPS 2024 MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training Bo Chen, Zhilei Bei, Xingyi Cheng, Pan Li, Jie Tang, Le Song

ICMLW 2024 MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training Bo Chen, Zhilei Bei, Xingyi Cheng, Pan Li, Jie Tang, Le Song

NeurIPSW 2024 Mixture of Experts Enable Efficient and Effective Protein Understanding and Design Ning Sun, Shuxian Zou, Tianhua Tao, Sazan Mahbub, Dian Li, Yonghao Zhuang, Hongyi Wang, Xingyi Cheng, Le Song, Eric P. Xing

NeurIPSW 2024 Scaling Dense Representations for Single Cell Gene Expression with Transcriptome-Scale Context Nicholas Ho, Caleb Ellington, Jinyu Hou, Sohan Addagudi, Shentong Mo, Tianhua Tao, Dian Li, Yonghao Zhuang, Hongyi Wang, Xingyi Cheng, Le Song, Eric P. Xing

NeurIPS 2024 Training Compute-Optimal Protein Language Models Xingyi Cheng, Bo Chen, Pan Li, Jing Gong, Jie Tang, Le Song

ICMLW 2024 Training Compute-Optimal Protein Language Models Xingyi Cheng, Bo Chen, Pan Li, Jing Gong, Jie Tang, Le Song

ICMLW 2024 Training Compute-Optimal Protein Language Models Xingyi Cheng, Bo Chen, Pan Li, Jing Gong, Jie Tang, Le Song

NeurIPS 2023 Injecting Multimodal Information into Rigid Protein Docking via Bi-Level Optimization Ruijia Wang, YiWu Sun, Yujie Luo, Shaochuan Li, Cheng Yang, Xingyi Cheng, Hui Li, Chuan Shi, Le Song

NeurIPS 2023 Revisiting Out-of-Distribution Robustness in NLP: Benchmarks, Analysis, and LLMs Evaluations Lifan Yuan, Yangyi Chen, Ganqu Cui, Hongcheng Gao, FangYuan Zou, Xingyi Cheng, Heng Ji, Zhiyuan Liu, Maosong Sun

NeurIPS 2023 xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data Jing Gong, Minsheng Hao, Xingyi Cheng, Xin Zeng, Chiming Liu, Jianzhu Ma, Xuegong Zhang, Taifeng Wang, Le Song