Deane, Charlotte

16 publications

ICLRW 2025 An Evaluation of Unconditional 3D Molecular Generation Methods Martin Buttenschoen, Yael Ziv, Garrett M Morris, Charlotte Deane

TMLR 2025 Transformers Trained on Proteins Can Learn to Attend to Euclidean Distance Isaac Ellmen, Constantin Schneider, Matthew I. J. Raybould, Charlotte Deane

ICLRW 2025 Transformers Trained on Proteins Can Learn to Attend to Euclidean Distance Isaac Ellmen, Constantin Schneider, Matthew I. J. Raybould, Charlotte Deane

ICMLW 2024 2Bits of Protein: Efficient Protein Language Models at the Scale of 2-Bits Oliver M. Turnbull, Mohamed Baioumy, Charlotte Deane

ICMLW 2024 ABodyBuilder3: Improved and Scalable Antibody Structure Predictions Henry Kenlay, Frederic A Dreyer, Daniel Cutting, Daniel Allen Nissley, Charlotte Deane

ICMLW 2024 AbFlex: Predicting the Conformational Flexibility of Antibody CDRs Fabian C Spoendlin, Wing Ki Wong, Guy Georges, Alexander Bujotzek, Charlotte Deane

ICML 2024 Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design Leo Klarner, Tim G. J. Rudner, Garrett M Morris, Charlotte Deane, Yee Whye Teh

NeurIPSW 2024 Improving Structural Plausibility in 3D Molecule Generation via Property-Conditioned Training with Distorted Molecules Lucy Vost, Vijil Chenthamarakshan, Payel Das, Charlotte Deane

ICML 2024 Kernel-Based Evaluation of Conditional Biological Sequence Models Pierre Glaser, Steffanie Paul, Alissa M Hummer, Charlotte Deane, Debora Susan Marks, Alan Nawzad Amin

ICLRW 2024 Low N, High N Protein Engineering G J Abrahams, Carlos Outeiral, Harrison Steel, Charlotte Deane

ICMLW 2024 On the Effectiveness of Quantum Chemistry Pre-Training for Pharmacological Property Prediction Arun Raja, Hongtao Zhao, Christian Tyrchan, Eva Nittinger, Michael M. Bronstein, Charlotte Deane, Garrett M Morris

ICLRW 2024 P-IgGen: A Paired Antibody Generative Language Model Oliver M. Turnbull, Dino Oglic, Charlotte Deane

NeurIPSW 2023 AntiFold: Improved Antibody Structure Design Using Inverse Folding Magnus Høie, Alissa Hummer, Tobias Olsen, Morten Nielsen, Charlotte Deane

NeurIPSW 2023 De Novo Design of Antibody Heavy Chains with SE(3) Diffusion Frederic A Dreyer, Daniel Cutting, David Errington, Constantin Schneider, Charlotte Deane

ICML 2023 Drug Discovery Under Covariate Shift with Domain-Informed Prior Distributions over Functions Leo Klarner, Tim G. J. Rudner, Michael Reutlinger, Torsten Schindler, Garrett M Morris, Charlotte Deane, Yee Whye Teh

ICMLW 2022 Bias in the Benchmark: Systematic Experimental Errors in Bioactivity Databases Confound Multi-Task and Meta-Learning Algorithms Leo Klarner, Michael Reutlinger, Torsten Schindler, Charlotte Deane, Garrett Morris