Ektefaie, Yasha

5 publications

NeurIPS 2025 Evolutionary Reasoning Does Not Arise in Standard Usage of Protein Language Models Yasha Ektefaie, Andrew Shen, Lavik Jain, Maha Farhat, Marinka Zitnik
ICML 2025 PertEval-scFM: Benchmarking Single-Cell Foundation Models for Perturbation Effect Prediction Aaron Wenteler, Martina Occhetta, Nikhil Branson, Victor Curean, Magdalena Huebner, William Dee, William Connell, Siu Pui Chung, Alex Hawkins-Hooker, Yasha Ektefaie, César Miguel Valdez Córdova, Amaya Gallagher-Syed
ICLRW 2025 Phyla: Towards a Foundation Model for Phylogenetic Inference Andrew Shen, Yasha Ektefaie, Lavik Jain, Maha Farhat, Marinka Zitnik
ICLRW 2025 Reinforcement Learning on Structure-Conditioned Categorical Diffusion for Protein Inverse Folding Yasha Ektefaie, Olivia Viessmann, Siddharth Narayanan, Drew Dresser, J. Mark Kim, Armen Mkrtchyan
NeurIPSW 2024 PertEval-scFM: Benchmarking Single-Cell Foundation Models for Perturbation Effect Prediction Aaron Wenteler, Martina Occhetta, Nikhil Branson, Magdalena Huebner, William Dee, Victor Curean, William Connell, Siu Pui Chung, Yasha Ektefaie, Amaya Gallagher-Syed, César Miguel Valdez Córdova