Ferkinghoff-Borg, Jesper

5 publications

NeurIPS 2025 Zero-Shot Protein Stability Prediction by Inverse Folding Models: A Free Energy Interpretation Jes Frellsen, Maher M. Kassem, Tone Bengtsen, Lars Olsen, Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg, Wouter Boomsma

NeurIPS 2024 Batched Energy-Entropy Acquisition for Bayesian Optimization Felix Teufel, Carsten Stahlhut, Jesper Ferkinghoff-Borg

ICLRW 2024 Enhancing Generative Perturbation Models with LLM-Informed Gene Embeddings Kaspar Märtens, Rory Donovan-Maiye, Jesper Ferkinghoff-Borg

NeurIPSW 2022 Probabilistic Thermal Stability Prediction Through Sparsity Promoting Transformer Representation Yevgen Zainchkovskyy, Jesper Ferkinghoff-Borg, Anja Bennett, Thomas Egebjerg, Nikolai Lorenzen, Per Jr. Greisen, Søren Hauberg, Carsten Stahlhut

AISTATS 2016 Bayesian Generalised Ensemble Markov Chain Monte Carlo Jes Frellsen, Ole Winther, Zoubin Ghahramani, Jesper Ferkinghoff-Borg