Frazer, Jonathan

4 publications

NeurIPS 2025 From Likelihood to Fitness: Improving Variant Effect Prediction in Protein and Genome Language Models Charles W. J. Pugh, Paulina G. Nuñez-Valencia, Mafalda Dias, Jonathan Frazer

NeurIPS 2023 ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Pascal Notin, Aaron Kollasch, Daniel Ritter, Lood van Niekerk, Steffanie Paul, Han Spinner, Nathan Rollins, Ada Shaw, Rose Orenbuch, Ruben Weitzman, Jonathan Frazer, Mafalda Dias, Dinko Franceschi, Yarin Gal, Debora Marks

NeurIPS 2022 Non-Identifiability and the Blessings of Misspecification in Models of Molecular Fitness Eli Weinstein, Alan Amin, Jonathan Frazer, Debora Marks

ICML 2022 Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-Time Retrieval Pascal Notin, Mafalda Dias, Jonathan Frazer, Javier Marchena-Hurtado, Aidan N Gomez, Debora Marks, Yarin Gal