Hotzel, Isidro
8 publications
ICLRW
2025
Guided Generation of B-Cell Receptors with Conditional Walk-Jump Sampling
Taylor Joren, Sarah A Robinson, Homa MohammadiPeyhani, Sai Pooja Mahajan, Edith Lee, Stephen Lillington, Qixin Bei, Saeed Saremi, Jae Hyeon Lee, Richard Bonneau, Isidro Hotzel, Vladimir Gligorijevic, Simon Kelow, Nathan C. Frey ICLR
2024
Protein Discovery with Discrete Walk-Jump Sampling
Nathan C. Frey, Dan Berenberg, Karina Zadorozhny, Joseph Kleinhenz, Julien Lafrance-Vanasse, Isidro Hotzel, Yan Wu, Stephen Ra, Richard Bonneau, Kyunghyun Cho, Andreas Loukas, Vladimir Gligorijevic, Saeed Saremi NeurIPS
2023
AbDiffuser: Full-Atom Generation of In-Vitro Functioning Antibodies
Karolis Martinkus, Jan Ludwiczak, Wei-Ching Liang, Julien Lafrance-Vanasse, Isidro Hotzel, Arvind Rajpal, Yan Wu, Kyunghyun Cho, Richard Bonneau, Vladimir Gligorijevic, Andreas Loukas ICLRW
2023
Learning Protein Family Manifolds with Smoothed Energy-Based Models
Nathan C. Frey, Dan Berenberg, Joseph Kleinhenz, Isidro Hotzel, Julien Lafrance-Vanasse, Ryan Lewis Kelly, Yan Wu, Arvind Rajpal, Stephen Ra, Richard Bonneau, Kyunghyun Cho, Andreas Loukas, Vladimir Gligorijevic, Saeed Saremi NeurIPSW
2023
Protein Discovery with Discrete Walk-Jump Sampling
Nathan Frey, Dan Berenberg, Karina Zadorozhny, Joseph Kleinhenz, Julien Lafrance-Vanasse, Isidro Hotzel, Yan Wu, Stephen Ra, Richard Bonneau, Kyunghyun Cho, Vladimir Gligorijevic, Saeed Saremi NeurIPSW
2022
A Pareto-Optimal Compositional Energy-Based Model for Sampling and Optimization of Protein Sequences
Natasa Tagasovska, Nathan C. Frey, Andreas Loukas, Isidro Hotzel, Julien Lafrance-Vanasse, Ryan Lewis Kelly, Yan Wu, Arvind Rajpal, Richard Bonneau, Kyunghyun Cho, Stephen Ra, Vladimir Gligorijevic