Hu, Bozhen

13 publications

AAAI 2025 Generalized Implicit Neural Representations for Dynamic Molecular Surface Modeling Fang Wu, Bozhen Hu, Stan Z. Li
ICLR 2025 MeToken: Uniform Micro-Environment Token Boosts Post-Translational Modification Prediction Cheng Tan, Zhenxiao Cao, Zhangyang Gao, Lirong Wu, Siyuan Li, Yufei Huang, Jun Xia, Bozhen Hu, Stan Z. Li
ICLR 2025 ReNovo: Retrieval-Based \emph{De Novo} Mass Spectrometry Peptide Sequencing Shaorong Chen, Jun Xia, Jingbo Zhou, Lecheng Zhang, Zhangyang Gao, Bozhen Hu, Cheng Tan, Wenjie Du, Stan Z. Li
ICML 2024 A Graph Is Worth $k$ Words: Euclideanizing Graph Using Pure Transformer Zhangyang Gao, Daize Dong, Cheng Tan, Jun Xia, Bozhen Hu, Stan Z. Li
NeurIPS 2024 AdaNovo: Towards Robust \emph{De Novo} Peptide Sequencing in Proteomics Against Data Biases Jun Xia, Shaorong Chen, Jingbo Zhou, Xiaojun Shan, Wenjie Du, Zhangyang Gao, Cheng Tan, Bozhen Hu, Jiangbin Zheng, Stan Z. Li
AAAI 2024 Cross-Gate MLP with Protein Complex Invariant Embedding Is a One-Shot Antibody Designer Cheng Tan, Zhangyang Gao, Lirong Wu, Jun Xia, Jiangbin Zheng, Xihong Yang, Yue Liu, Bozhen Hu, Stan Z. Li
NeurIPS 2024 FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning Sizhe Liu, Jun Xia, Lecheng Zhang, Yuchen Liu, Yue Liu, Wenjie Du, Zhangyang Gao, Bozhen Hu, Cheng Tan, Hongxin Xiang, Stan Z. Li
NeurIPS 2024 Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure Bozhen Hu, Cheng Tan, Jun Xia, Yue Liu, Lirong Wu, Jiangbin Zheng, Yongjie Xu, Yufei Huang, Stan Z. Li
AAAI 2024 PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction Lirong Wu, Yufei Huang, Cheng Tan, Zhangyang Gao, Bozhen Hu, Haitao Lin, Zicheng Liu, Stan Z. Li
NeurIPS 2024 ProtGO: Function-Guided Protein Modeling for Unified Representation Learning Bozhen Hu, Cheng Tan, Yongjie Xu, Zhangyang Gao, Jun Xia, Lirong Wu, Stan Z. Li
ICLR 2024 RDesign: Hierarchical Data-Efficient Representation Learning for Tertiary Structure-Based RNA Design Cheng Tan, Yijie Zhang, Zhangyang Gao, Bozhen Hu, Siyuan Li, Zicheng Liu, Stan Z. Li
ICLR 2023 Mole-BERT: Rethinking Pre-Training Graph Neural Networks for Molecules Jun Xia, Chengshuai Zhao, Bozhen Hu, Zhangyang Gao, Cheng Tan, Yue Liu, Siyuan Li, Stan Z. Li
NeurIPS 2023 Understanding the Limitations of Deep Models for Molecular Property Prediction: Insights and Solutions Jun Xia, Lecheng Zhang, Xiao Zhu, Yue Liu, Zhangyang Gao, Bozhen Hu, Cheng Tan, Jiangbin Zheng, Siyuan Li, Stan Z. Li