Jaakkola, Tommi
134 publications
NeurIPSW
2024
Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design
ICML
2024
Harmonic Self-Conditioned Flow Matching for Joint Multi-Ligand Docking and Binding Site Design
NeurIPSW
2023
Harmonic Prior Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design
NeurIPSW
2023
Harmonic Prior Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design
NeurIPS
2015
Principal Differences Analysis: Interpretable Characterization of Differences Between Distributions
NeurIPS
2013
Learning Efficient Random Maximum A-Posteriori Predictors with Non-Decomposable Loss Functions