Jing, Bowen

28 publications

ICLRW 2025 Continuously Tempered Diffusion Samplers Ezra Erives, Bowen Jing, Peter Holderrieth, Tommi Jaakkola

ICLR 2025 ProtComposer: Compositional Protein Structure Generation with 3D Ellipsoids Hannes Stark, Bowen Jing, Tomas Geffner, Jason Yim, Tommi Jaakkola, Arash Vahdat, Karsten Kreis

ICML 2024 AlphaFold Meets Flow Matching for Generating Protein Ensembles Bowen Jing, Bonnie Berger, Tommi Jaakkola

ICML 2024 Dirichlet Flow Matching with Applications to DNA Sequence Design Hannes Stark, Bowen Jing, Chenyu Wang, Gabriele Corso, Bonnie Berger, Regina Barzilay, Tommi Jaakkola

ICLRW 2024 Dirichlet Flow Matching with Applications to DNA Sequence Design Hannes Stark, Bowen Jing, Chenyu Wang, Gabriele Corso, Bonnie Berger, Regina Barzilay, Tommi Jaakkola

ICLR 2024 Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms Bowen Jing, Tommi S. Jaakkola, Bonnie Berger

NeurIPS 2024 Generative Modeling of Molecular Dynamics Trajectories Bowen Jing, Hannes Stärk, Tommi Jaakkola, Bonnie Berger

ICMLW 2024 Generative Modeling of Molecular Dynamics Trajectories Bowen Jing, Hannes Stark, Tommi Jaakkola, Bonnie Berger

ICML 2024 Harmonic Self-Conditioned Flow Matching for Joint Multi-Ligand Docking and Binding Site Design Hannes Stark, Bowen Jing, Regina Barzilay, Tommi Jaakkola

ICLRW 2024 Verlet Flows: Exact-Likelihood Integrators for Flow-Based Generative Models Ezra Erives, Bowen Jing, Tommi Jaakkola

NeurIPSW 2023 AlphaFold Meets Flow Matching for Generating Protein Ensembles Bowen Jing, Bonnie Berger, Tommi Jaakkola

NeurIPSW 2023 AlphaFold Meets Flow Matching for Generating Protein Ensembles Bowen Jing, Bonnie Berger, Tommi Jaakkola

NeurIPSW 2023 AlphaFold Meets Flow Matching for Generating Protein Ensembles Bowen Jing, Bonnie Berger, Tommi Jaakkola

ICLR 2023 DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking Gabriele Corso, Hannes Stärk, Bowen Jing, Regina Barzilay, Tommi S. Jaakkola

ICLRW 2023 EigenFold: Generative Protein Structure Prediction with Diffusion Models Bowen Jing, Ezra Erives, Peter Pao-Huang, Gabriele Corso, Bonnie Berger, Tommi S. Jaakkola

NeurIPSW 2023 Harmonic Prior Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design Hannes Stark, Bowen Jing, Regina Barzilay, Tommi Jaakkola

NeurIPSW 2023 Harmonic Prior Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design Hannes Stark, Bowen Jing, Regina Barzilay, Tommi Jaakkola

NeurIPSW 2023 Learning Scalar Fields for Molecular Docking with Fast Fourier Transforms Bowen Jing, Tommi Jaakkola, Bonnie Berger

NeurIPSW 2023 Learning Scalar Fields for Molecular Docking with Fast Fourier Transforms Bowen Jing, Tommi Jaakkola, Bonnie Berger

NeurIPSW 2023 Scalable Multimer Structure Prediction Using Diffusion Models Peter Pao-Huang, Bowen Jing, Bonnie Berger

NeurIPSW 2023 Scalable Multimer Structure Prediction Using Diffusion Models Peter Pao-Huang, Bowen Jing, Bonnie Berger

NeurIPSW 2022 DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking Gabriele Corso, Hannes Stärk, Bowen Jing, Regina Barzilay, Tommi S. Jaakkola

NeurIPSW 2022 DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking Gabriele Corso, Hannes Stärk, Bowen Jing, Regina Barzilay, Tommi S. Jaakkola

ECCV 2022 Subspace Diffusion Generative Models Bowen Jing, Gabriele Corso, Renato Berlinghieri, Tommi Jaakkola

NeurIPS 2022 Torsional Diffusion for Molecular Conformer Generation Bowen Jing, Gabriele Corso, Jeffrey Chang, Regina Barzilay, Tommi Jaakkola

ICLRW 2022 Torsional Diffusion for Molecular Conformer Generation Bowen Jing, Gabriele Corso, Regina Barzilay, Tommi S. Jaakkola

ICLR 2021 Learning from Protein Structure with Geometric Vector Perceptrons Bowen Jing, Stephan Eismann, Patricia Suriana, Raphael John Lamarre Townshend, Ron Dror

AAAI 2021 Rotation-Invariant Gait Identification with Quaternion Convolutional Neural Networks (Student Abstract) Bowen Jing, Vinay Uday Prabhu, Angela Gu, John Whaley