Kim, Dokyoon
6 publications
ICLR
2025
MAESTRO: Masked Encoding Set Transformer with Self-Distillation
Matthew Eric Lee, Jaesik Kim, Matei Ionita, Jonghyun Lee, Michelle L. McKeague, Yonghyun Nam, Irene Khavin, Yidi Huang, Victoria Fang, Sokratis Apostolidis, Divij Mathew, Shwetank, Ajinkya Pattekar, Zahabia Rangwala, Amit Bar-Or, Benjamin A Fensterheim, Benjamin A. Abramoff, Rennie L. Rhee, Damian Maseda, Allison R Greenplate, John Wherry, Dokyoon Kim ICLRW
2025
Reference-Free Cell-Type Annotation with LLM Agents
Yidi Huang, Ivan Cohen, Van Quynh-Thi Truong, Pedram B Bayat, Sameer A Bhatti, Luca Paruzzo, Mark M. Painter, Shirong Zheng, Derek Alan Oldridge, Joost Wagenaar, Allison R Greenplate, Dokyoon Kim NeurIPSW
2023
Single-Cell Masked Autoencoder: An Accurate and Interpretable Automated Immunophenotyper
Jaesik Kim, Matei Ionita, Matthew Eric Lee, Michelle McKeague, Ajinkya Pattekar, Mark Painter, Joost Wagenaar, Van Quynh-Thi Truong, Dylan Norton, Divij Mathew, Yonghyun Nam, Sokratis Apostolidis, Patryk Orzechowski, Sang-Hyuk Jung, Jakob Woerner, Yidi Huang, Nuala J. Meyer, Allison R. Greenplate, Dokyoon Kim, John Wherry