Koo, Peter K

9 publications

ICLRW 2025 Decoding the Mechanistic Impact of Genetic Variation on Regulatory Sequences with Deep Learning Evan Seitz, David M. McCandlish, Justin Kinney, Peter K Koo

ICLRW 2025 PIONEER: A Virtual Platform for Iterative Improvement of Genomic Deep Learning Alessandro Crnjar, John J Desmarais, Justin Kinney, Peter K Koo

ICLRW 2025 Uncertainty-Aware Genomic Deep Learning with Knowledge Distillation Jessica Zhou, Kaeli Rizzo, Ziqi Tang, Peter K Koo

ICLRW 2025 Understanding DNA Discrete Diffusion for Engineering Regulatory DNA Sequences Anirban Sarkar, Yijie Kang, Nirali Somia, Peter K Koo

NeurIPSW 2024 Designing DNA with Tunable Regulatory Activity Using Discrete Diffusion Anirban Sarkar, Ziqi Tang, Chris Z Zhao, Peter K Koo

NeurIPSW 2024 Explainable AI for Computational Pathology Identifies Model Limitations and Tissue Biomarkers Jakub R. Kaczmarzyk, Joel Saltz, Peter K Koo

ICLRW 2021 Single Layers of Attention Suffice to Predict Protein Contacts Nick Bhattacharya, Neil Thomas, Roshan Rao, Justas Dauparas, Peter K Koo, David Baker, Yun S. Song, Sergey Ovchinnikov

NeurIPSW 2021 Towards Trustworthy Explanations with Gradient-Based Attribution Methods Ethan L Labelson, Rohit Tripathy, Peter K Koo

NeurIPSW 2021 Uncovering Motif Interactions from Convolutional-Attention Networks for Genomics Rohan Singh Ghotra, Nicholas Keone Lee, Peter K Koo