Li, Shaoning

6 publications

ICLR 2026 ProteinAE: Protein Diffusion Autoencoders for Structure Encoding Shaoning Li, Le Zhuo, Yusong Wang, Mingyu Li, Xinheng He, Fandi Wu, Hongsheng Li, Pheng-Ann Heng

ICLRW 2025 Design of Ligand-Binding Proteins with Atomic Flow Matching Junqi Liu, Shaoning Li, Chence Shi, Zhi Yang, Jian Tang

ICLRW 2024 F$^3$low: Frame-to-Frame Coarse-Grained Molecular Dynamics with SE(3) Guided Flow Matching Shaoning Li, Yusong Wang, Mingyu Li, Bin Shao, Nanning Zheng, Zhang Jian, Jian Tang

ICMLW 2024 Improving AlphaFlow for Efficient Protein Ensembles Generation Shaoning Li, Mingyu Li, Yusong Wang, Xinheng He, Zhang Jian, Nanning Zheng, Pheng-Ann Heng

NeurIPS 2024 Neural P$^3$M: A Long-Range Interaction Modeling Enhancer for Geometric GNNs Yusong Wang, Chaoran Cheng, Shaoning Li, Yuxuan Ren, Bin Shao, Ge Liu, Pheng-Ann Heng, Nanning Zheng

NeurIPS 2023 Geometric Transformer with Interatomic Positional Encoding Yusong Wang, Shaoning Li, Tong Wang, Bin Shao, Nanning Zheng, Tie-Yan Liu