Li, Stan Z.
190 publications
ICLR
2025
Bridging the Gap Between Database Search and \emph{De Novo} Peptide Sequencing with SearchNovo
ICLR
2025
MeToken: Uniform Micro-Environment Token Boosts Post-Translational Modification Prediction
AAAI
2025
dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-Driven Pre-Binding Antigen
NeurIPS
2024
AdaNovo: Towards Robust \emph{De Novo} Peptide Sequencing in Proteomics Against Data Biases
NeurIPSW
2024
Bridging the Gap Between Database Search and \emph{De Novo} Peptide Sequencing with SearchNovo
ICML
2024
Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective
NeurIPS
2024
Deep Graph Neural Networks via Posteriori-Sampling-Based Node-Adaptative Residual Module
ECML-PKDD
2024
Interpretable and Generalizable Spatiotemporal Predictive Learning with Disentangled Consistency
NeurIPS
2024
Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure
NeurIPS
2024
NovoBench: Benchmarking Deep Learning-Based \emph{De Novo} Sequencing Methods in Proteomics
NeurIPS
2024
PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation
AAAI
2024
Protein 3D Graph Structure Learning for Robust Structure-Based Protein Property Prediction
ICLR
2024
RDesign: Hierarchical Data-Efficient Representation Learning for Tertiary Structure-Based RNA Design
ICML
2024
Short-Long Convolutions Help Hardware-Efficient Linear Attention to Focus on Long Sequences
ICML
2024
VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
NeurIPS
2023
Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaboration
NeurIPS
2023
ProteinInvBench: Benchmarking Protein Inverse Folding on Diverse Tasks, Models, and Metrics
NeurIPS
2023
Understanding the Limitations of Deep Models for Molecular Property Prediction: Insights and Solutions
ICMLW
2023
Why Deep Models Often Cannot Beat Non-Deep Counterparts on Molecular Property Prediction?
ECML-PKDD
2022
GraphMixup: Improving Class-Imbalanced Node Classification by Reinforcement Mixup and Self-Supervised Context Prediction
ICMLW
2022
Pre-Training Graph Neural Networks for Molecular Representations: Retrospect and Prospect
NeurIPS
2022
Towards Reasonable Budget Allocation in Untargeted Graph Structure Attacks via Gradient Debias
CVPRW
2016
ChaLearn Looking at People RGB-D Isolated and Continuous Datasets for Gesture Recognition
CVPRW
2013
Exploring Structural Information and Fusing Multiple Features for Person Re-Identification