Lu, Jiarui

15 publications

ICML 2025 Aligning Protein Conformation Ensemble Generation with Physical Feedback Jiarui Lu, Xiaoyin Chen, Stephen Zhewen Lu, Aurelie Lozano, Vijil Chenthamarakshan, Payel Das, Jian Tang

NeurIPS 2025 Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab Haonan Duan, Stephen Zhewen Lu, Caitlin Fiona Harrigan, Nishkrit Desai, Jiarui Lu, Michał Koziarski, Leonardo Cotta, Chris J. Maddison

ICLR 2025 Structure Language Models for Protein Conformation Generation Jiarui Lu, Xiaoyin Chen, Stephen Zhewen Lu, Chence Shi, Hongyu Guo, Yoshua Bengio, Jian Tang

ICLRW 2025 Towards Protein Sequence & Structure Co-Design with Multi-Modal Language Models Stephen Zhewen Lu, Jiarui Lu, Hongyu Guo, Jian Tang

ICLRW 2024 Fusing Neural and Physical: Augment Protein Conformation Sampling with Tractable Simulations Jiarui Lu, Zuobai Zhang, Bozitao Zhong, Chence Shi, Jian Tang

ICLRW 2024 Probing the Multi-Turn Planning Capabilities of LLMs via 20 Question Games Yizhe Zhang, Jiarui Lu, Navdeep Jaitly

ICLR 2024 Str2Str: A Score-Based Framework for Zero-Shot Protein Conformation Sampling Jiarui Lu, Bozitao Zhong, Zuobai Zhang, Jian Tang

NeurIPSW 2024 Structure Language Models for Protein Conformation Generation Jiarui Lu, Xiaoyin Chen, Stephen Zhewen Lu, Chence Shi, Hongyu Guo, Yoshua Bengio, Jian Tang

ICLRW 2024 Structure-Informed Protein Language Model Zuobai Zhang, Jiarui Lu, Vijil Chenthamarakshan, Aurelie Lozano, Payel Das, Jian Tang

ICLR 2024 Towards Foundational Models for Molecular Learning on Large-Scale Multi-Task Datasets Dominique Beaini, Shenyang Huang, Joao Alex Cunha, Zhiyi Li, Gabriela Moisescu-Pareja, Oleksandr Dymov, Samuel Maddrell-Mander, Callum McLean, Frederik Wenkel, Luis Müller, Jama Hussein Mohamud, Ali Parviz, Michael Craig, Michał Koziarski, Jiarui Lu, Zhaocheng Zhu, Cristian Gabellini, Kerstin Klaser, Josef Dean, Cas Wognum, Maciej Sypetkowski, Guillaume Rabusseau, Reihaneh Rabbany, Jian Tang, Christopher Morris, Mirco Ravanelli, Guy Wolf, Prudencio Tossou, Hadrien Mary, Therence Bois, Andrew W Fitzgibbon, Blazej Banaszewski, Chad Martin, Dominic Masters

TMLR 2024 Unsupervised Discovery of Steerable Factors When Graph Deep Generative Models Are Entangled Shengchao Liu, Chengpeng Wang, Jiarui Lu, Weili Nie, Hanchen Wang, Zhuoxinran Li, Bolei Zhou, Jian Tang

ICLR 2023 Protein Sequence and Structure Co-Design with Equivariant Translation Chence Shi, Chuanrui Wang, Jiarui Lu, Bozitao Zhong, Jian Tang

ICMLW 2023 Score-Based Enhanced Sampling for Protein Molecular Dynamics Jiarui Lu, Bozitao Zhong, Jian Tang

NeurIPSW 2022 GraphCG: Unsupervised Discovery of Steerable Factors in Graphs Shengchao Liu, Chengpeng Wang, Weili Nie, Hanchen Wang, Jiarui Lu, Bolei Zhou, Jian Tang

NeurIPS 2022 PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding Minghao Xu, Zuobai Zhang, Jiarui Lu, Zhaocheng Zhu, Yangtian Zhang, Ma Chang, Runcheng Liu, Jian Tang