Ovchinnikov, Sergey

9 publications

ICLRW 2025 Structure-Aware Language Models Trained on Ultra-Mega-Scale Metagenomic Data Improve Protein Folding Stability Prediction Yehlin Cho, Kotaro Tsuboyama, Gabriel J. Rocklin, Sergey Ovchinnikov

ICLR 2025 The OMG Dataset: An Open MetaGenomic Corpus for Mixed-Modality Genomic Language Modeling Andre Cornman, Jacob West-Roberts, Antonio Pedro Camargo, Simon Roux, Martin Beracochea, Milot Mirdita, Sergey Ovchinnikov, Yunha Hwang

ICMLW 2024 Enhancing Protein Design Robustness Through Noise-Informed Sequence Design Yehlin Cho, Sergey Ovchinnikov, Christopher Frank

ICMLW 2023 Differentiable Search of Evolutionary Trees Ramith Hettiarachchi, Avi Z Swartz, Sergey Ovchinnikov

ICMLW 2023 Differentiable Search of Evolutionary Trees from Leaves Ramith Hettiarachchi, Avi Z Swartz, Sergey Ovchinnikov

NeurIPSW 2023 Genomic Language Model Predicts Protein Co-Regulation and Function Yunha Hwang, Andre Cornman, Elizabeth Kellogg, Sergey Ovchinnikov, Peter Girguis

NeurIPSW 2023 Genomic Language Model Predicts Protein Co-Regulation and Function Yunha Hwang, Andre Cornman, Sergey Ovchinnikov, Peter Girguis

ICLRW 2021 Single Layers of Attention Suffice to Predict Protein Contacts Nick Bhattacharya, Neil Thomas, Roshan Rao, Justas Dauparas, Peter K Koo, David Baker, Yun S. Song, Sergey Ovchinnikov

ICLR 2021 Transformer Protein Language Models Are Unsupervised Structure Learners Roshan Rao, Joshua Meier, Tom Sercu, Sergey Ovchinnikov, Alexander Rives