Shi, Chence

14 publications

ICLRW 2025 Design of Ligand-Binding Proteins with Atomic Flow Matching Junqi Liu, Shaoning Li, Chence Shi, Zhi Yang, Jian Tang

ICLR 2025 Structure Language Models for Protein Conformation Generation Jiarui Lu, Xiaoyin Chen, Stephen Zhewen Lu, Chence Shi, Hongyu Guo, Yoshua Bengio, Jian Tang

ICLRW 2024 Fusing Neural and Physical: Augment Protein Conformation Sampling with Tractable Simulations Jiarui Lu, Zuobai Zhang, Bozitao Zhong, Chence Shi, Jian Tang

NeurIPSW 2024 Structure Language Models for Protein Conformation Generation Jiarui Lu, Xiaoyin Chen, Stephen Zhewen Lu, Chence Shi, Hongyu Guo, Yoshua Bengio, Jian Tang

ICLR 2023 E3Bind: An End-to-End Equivariant Network for Protein-Ligand Docking Yangtian Zhang, Huiyu Cai, Chence Shi, Jian Tang

ICLR 2023 Protein Sequence and Structure Co-Design with Equivariant Translation Chence Shi, Chuanrui Wang, Jiarui Lu, Bozitao Zhong, Jian Tang

ICLR 2022 GeoDiff: A Geometric Diffusion Model for Molecular Conformation Generation Minkai Xu, Lantao Yu, Yang Song, Chence Shi, Stefano Ermon, Jian Tang

ICML 2021 An End-to-End Framework for Molecular Conformation Generation via Bilevel Programming Minkai Xu, Wujie Wang, Shitong Luo, Chence Shi, Yoshua Bengio, Rafael Gomez-Bombarelli, Jian Tang

ICML 2021 Learning Gradient Fields for Molecular Conformation Generation Chence Shi, Shitong Luo, Minkai Xu, Jian Tang

ICLR 2021 MARS: Markov Molecular Sampling for Multi-Objective Drug Discovery Yutong Xie, Chence Shi, Hao Zhou, Yuwei Yang, Weinan Zhang, Yong Yu, Lei Li

ICML 2021 Non-Autoregressive Electron Redistribution Modeling for Reaction Prediction Hangrui Bi, Hengyi Wang, Chence Shi, Connor Coley, Jian Tang, Hongyu Guo

NeurIPS 2021 Predicting Molecular Conformation via Dynamic Graph Score Matching Shitong Luo, Chence Shi, Minkai Xu, Jian Tang

ICML 2020 A Graph to Graphs Framework for Retrosynthesis Prediction Chence Shi, Minkai Xu, Hongyu Guo, Ming Zhang, Jian Tang

ICLR 2020 GraphAF: A Flow-Based Autoregressive Model for Molecular Graph Generation Chence Shi, Minkai Xu, Zhaocheng Zhu, Weinan Zhang, Ming Zhang, Jian Tang