Stanton, Samuel Don

10 publications

ICLRW 2025 A Guided Design Framework for the Optimization of Therapeutic-like Antibodies Amy Wang, Zhe Sang, Samuel Don Stanton, Jennifer L. Hofmann, Saeed Izadi, Eliott Park, Jan Ludwiczak, Matthieu Kirchmeyer, Darcy Davidson, Andrew Maier, Tom Pritsky, Nathan C. Frey, Andrew Martin Watkins, Franziska Seeger

ICLR 2025 Concept Bottleneck Language Models for Protein Design Aya Abdelsalam Ismail, Tuomas Oikarinen, Amy Wang, Julius Adebayo, Samuel Don Stanton, Hector Corrada Bravo, Kyunghyun Cho, Nathan C. Frey

ICML 2025 Generalists vs. Specialists: Evaluating LLMs on Highly-Constrained Biophysical Sequence Optimization Tasks Angelica Chen, Samuel Don Stanton, Frances Ding, Robert G Alberstein, Andrew Martin Watkins, Richard Bonneau, Vladimir Gligorijevic, Kyunghyun Cho, Nathan C. Frey

ICMLW 2024 Closed-Form Test Functions for Biophysical Sequence Optimization Algorithms Samuel Don Stanton, Robert G Alberstein, Nathan C. Frey, Andrew Martin Watkins, Kyunghyun Cho

ICML 2024 Conformal Validity Guarantees Exist for Any Data Distribution (and How to Find Them) Drew Prinster, Samuel Don Stanton, Anqi Liu, Suchi Saria

NeurIPSW 2024 LLMs Are Highly-Constrained Biophysical Sequence Optimizers Angelica Chen, Samuel Don Stanton, Robert G Alberstein, Andrew Martin Watkins, Richard Bonneau, Vladimir Gligorijevic, Kyunghyun Cho, Nathan C. Frey

NeurIPSW 2023 Identifying Regularization Schemes That Make Feature Attributions Faithful Julius Adebayo, Samuel Don Stanton, Simon Kelow, Michael Maser, Richard Bonneau, Vladimir Gligorijevic, Kyunghyun Cho, Stephen Ra, Nathan C. Frey

ICMLW 2023 Protein Design with Guided Discrete Diffusion Nate Gruver, Samuel Don Stanton, Nathan C. Frey, Tim G. J. Rudner, Isidro Hotzel, Julien Lafrance-Vanasse, Arvind Rajpal, Kyunghyun Cho, Andrew Gordon Wilson

ICLR 2022 Deconstructing the Inductive Biases of Hamiltonian Neural Networks Nate Gruver, Marc Anton Finzi, Samuel Don Stanton, Andrew Gordon Wilson

NeurIPSW 2022 PropertyDAG: Multi-Objective Bayesian Optimization of Partially Ordered, Mixed-Variable Properties for Biological Sequence Design Ji Won Park, Samuel Don Stanton, Saeed Saremi, Andrew Martin Watkins, Henri Dwyer, Vladimir Gligorijevic, Richard Bonneau, Stephen Ra, Kyunghyun Cho