Vincoff, Sophia

7 publications

ICLRW 2025 MeMDLM: De Novo Membrane Protein Design with Property-Guided Discrete Diffusion Shrey Goel, Vishrut Thoutam, Edgar Mariano Marroquin, Aaron Gokaslan, Arash Firouzbakht, Sophia Vincoff, Volodymyr Kuleshov, Huong T. Kratochvil, Pranam Chatterjee

ICLRW 2025 Programmable Protein Stabilization with Language Model-Derived Peptide Guides Lauren Hong, Tian Zi Wang, Divya Srijay, Howard Liu, Rio Watson, Lin Zhao, Sophia Vincoff, Leo Chen, Kseniia Kholina, Shrey Goel, Matthew DeLisa, Pranam Chatterjee

ICLRW 2025 SOAPI: Siamese-Guided Generation of Off-Target-Avoiding Protein Interactions Sophia Vincoff, Oscar Davis, Alexander Tong, Joey Bose, Pranam Chatterjee

ICMLW 2024 FusOn-pLM: A Fusion Oncoprotein-Specific Language Model via Focused Probabilistic Masking Sophia Vincoff, Shrey Goel, Kseniia Kholina, Pranam Chatterjee

NeurIPSW 2024 MeMDLM: De Novo Membrane Protein Design with Masked Discrete Diffusion Protein Language Models Shrey Goel, Vishrut Thoutam, Edgar Mariano Marroquin, Aaron Gokaslan, Arash Firouzbakht, Sophia Vincoff, Volodymyr Kuleshov, Huong T. Kratochvil, Pranam Chatterjee

ICLRW 2024 PPI-Llama2: De Novo Generation of Binding Proteins Conditioned on Target Sequence Alone Yinuo Zhang, Phil He, Ashley Hsu, Sophia Vincoff, Pranam Chatterjee

ICLRW 2024 Programmable Protein Stabilization with Language Model-Derived Peptide Guides Lauren Hong, Tianzheng Ye, Tian Zi Wang, Divya Srijay, Lin Zhao, Sophia Vincoff, Tianlai Chen, Matthew DeLisa, Pranam Chatterjee