Wenkel, Frederik

12 publications

LoG 2025 Towards a General Recipe for Combinatorial Optimization with Multi-Filter GNNs Frederik Wenkel, Semih Cantürk, Stefan Horoi, Michael Perlmutter, Guy Wolf

NeurIPS 2024 How Molecules Impact Cells: Unlocking Contrastive PhenoMolecular Retrieval Philip Fradkin, Puria Azadi, Karush Suri, Frederik Wenkel, Ali Bashashati, Maciej Sypetkowski, Dominique Beaini

NeurIPSW 2024 Molphenix: A Multimodal Foundation Model for PhenoMolecular Retrieval Philip Fradkin, Puria Azadi Moghadam, Karush Suri, Frederik Wenkel, Maciej Sypetkowski, Dominique Beaini

NeurIPSW 2024 Molphenix: A Multimodal Foundation Model for PhenoMolecular Retrieval Philip Fradkin, Puria Azadi Moghadam, Karush Suri, Frederik Wenkel, Maciej Sypetkowski, Dominique Beaini

NeurIPS 2024 On the Scalability of GNNs for Molecular Graphs Maciej Sypetkowski, Frederik Wenkel, Farimah Poursafaei, Nia Dickson, Karush Suri, Philip Fradkin, Dominique Beaini

ICLRW 2024 On the Scalability of GNNs for Molecular Graphs Maciej Sypetkowski, Frederik Wenkel, Farimah Poursafaei, Nia Dickson, Karush Suri, Philip Fradkin, Dominique Beaini

ICLR 2024 Towards Foundational Models for Molecular Learning on Large-Scale Multi-Task Datasets Dominique Beaini, Shenyang Huang, Joao Alex Cunha, Zhiyi Li, Gabriela Moisescu-Pareja, Oleksandr Dymov, Samuel Maddrell-Mander, Callum McLean, Frederik Wenkel, Luis Müller, Jama Hussein Mohamud, Ali Parviz, Michael Craig, Michał Koziarski, Jiarui Lu, Zhaocheng Zhu, Cristian Gabellini, Kerstin Klaser, Josef Dean, Cas Wognum, Maciej Sypetkowski, Guillaume Rabusseau, Reihaneh Rabbany, Jian Tang, Christopher Morris, Mirco Ravanelli, Guy Wolf, Prudencio Tossou, Hadrien Mary, Therence Bois, Andrew W Fitzgibbon, Blazej Banaszewski, Chad Martin, Dominic Masters

LoG 2023 Inferring Dynamic Regulatory Interaction Graphs from Time Series Data with Perturbations Dhananjay Bhaskar, Daniel Sumner Magruder, Matheo Morales, Edward De Brouwer, Aarthi Venkat, Frederik Wenkel, James Noonan, Guy Wolf, Natalia Ivanova, Smita Krishnaswamy

ICMLW 2023 Pretrained Language Models to Solve Graph Tasks in Natural Language Frederik Wenkel, Guy Wolf, Boris Knyazev

NeurIPS 2022 Can Hybrid Geometric Scattering Networks Help Solve the Maximum Clique Problem? Yimeng Min, Frederik Wenkel, Michael Perlmutter, Guy Wolf

LoG 2022 Taxonomy of Benchmarks in Graph Representation Learning Renming Liu, Semih Cantürk, Frederik Wenkel, Sarah McGuire, Xinyi Wang, Anna Little, Leslie O’ Bray, Michael Perlmutter, Bastian Rieck, Matthew Hirn, Guy Wolf, Ladislav Rampášek

NeurIPS 2020 Scattering GCN: Overcoming Oversmoothness in Graph Convolutional Networks Yimeng Min, Frederik Wenkel, Guy Wolf