Xu, Jinbo

16 publications

MLHC 2025 Bidirectional Hierarchical Protein Multi-Modal Representation Learning Xuefeng Liu, Songhao Jiang, Chih-chan Tien, Jinbo Xu, Rick L. Stevens

ICML 2025 Retrieval Augmented Zero-Shot Enzyme Generation for Specified Substrate Jiahe Du, Kaixiong Zhou, Xinyu Hong, Zhaozhuo Xu, Jinbo Xu, Xiao Huang

MLHC 2025 ScaffoldGPT: A Scaffold-Based GPT Model for Drug Optimization Xuefeng Liu, Songhao Jiang, Ian Foster, Jinbo Xu, Rick L. Stevens

UAI 2021 PALM: Probabilistic Area Loss Minimization for Protein Sequence Alignment Fan Ding, Nan Jiang, Jianzhu Ma, Jian Peng, Jinbo Xu, Yexiang Xue

ICML 2021 XOR-CD: Linearly Convergent Constrained Structure Generation Fan Ding, Jianzhu Ma, Jinbo Xu, Yexiang Xue

ECML-PKDD 2016 AUC-Maximized Deep Convolutional Neural Fields for Protein Sequence Labeling Sheng Wang, Siqi Sun, Jinbo Xu

ECML-PKDD 2015 Exact Hybrid Covariance Thresholding for Joint Graphical Lasso Qingming Tang, Chao Yang, Jian Peng, Jinbo Xu

AISTATS 2015 Inferring Block Structure of Graphical Models in Exponential Families Siqi Sun, Hai Wang, Jinbo Xu

ICML 2015 Learning Scale-Free Networks by Dynamic Node Specific Degree Prior Qingming Tang, Siqi Sun, Jinbo Xu

NeurIPS 2015 Learning Structured Densities via Infinite Dimensional Exponential Families Siqi Sun, Mladen Kolar, Jinbo Xu

UAI 2015 Structure Learning Constrained by Node-Specific Degree Distribution Jianzhu Ma, Feng Zhao, Jinbo Xu

AISTATS 2014 Adaptive Variable Clustering in Gaussian Graphical Models Siqi Sun, Yuancheng Zhu, Jinbo Xu

AISTATS 2013 Estimating the Partition Function of Graphical Models Using Langevin Importance Sampling Jianzhu Ma, Jian Peng, Sheng Wang, Jinbo Xu

AISTATS 2012 A Two-Graph Guided Multi-Task Lasso Approach for eQTL Mapping Xiaohui Chen, Xinghua Shi, Xing Xu, Zhiyong Wang, Ryan Mills, Charles Lee, Jinbo Xu

AISTATS 2012 Approximate Inference by Intersecting Semidefinite Bound and Local Polytope Jian Peng, Tamir Hazan, Nathan Srebro, Jinbo Xu

NeurIPS 2009 Conditional Neural Fields Jian Peng, Liefeng Bo, Jinbo Xu