Yuan, Xinyu

13 publications

ICLR 2026 Divide, Harmonize, Then Conquer It: Shooting Multi-Commodity Flow Problems with Multimodal Language Models Xinyu Yuan, Yan Qiao, Zonghui Wang, Wenzhi Chen

ICLR 2026 Fast Proteome-Scale Protein Interaction Retrieval via Residue-Level Factorization Jianan Zhao, Zhihao Zhan, Narendra Chaudhary, Xinyu Yuan, Zuobai Zhang, Qian Cong, Jian Zhou, Sanchit Misra, Jian Tang

ICML 2025 Protein Structure Tokenization: Benchmarking and New Recipe Xinyu Yuan, Zichen Wang, Marcus D. Collins, Huzefa Rangwala

NeurIPS 2024 Cell Ontology Guided Transcriptome Foundation Model Xinyu Yuan, Zhihao Zhan, Zuobai Zhang, Manqi Zhou, Jianan Zhao, Boyu Han, Yue Li, Jian Tang

NeurIPSW 2024 Cell Ontology Guided Transcriptome Foundation Model Xinyu Yuan, Zhihao Zhan, Zuobai Zhang, Manqi Zhou, Jianan Zhao, Boyu Han, Yue Li, Jian Tang

NeurIPSW 2024 Cell Ontology Guided Transcriptome Foundation Model Xinyu Yuan, Zhihao Zhan, Zuobai Zhang, Manqi Zhou, Jianan Zhao, Boyu Han, Yue Li, Jian Tang

NeurIPSW 2024 Cell Ontology Guided Transcriptome Foundation Model Xinyu Yuan, Zhihao Zhan, Zuobai Zhang, Manqi Zhou, Jianan Zhao, Boyu Han, Yue Li, Jian Tang

ICLR 2024 Diffusion-TS: Interpretable Diffusion for General Time Series Generation Xinyu Yuan, Yan Qiao

ICLR 2024 Towards Foundation Models for Knowledge Graph Reasoning Mikhail Galkin, Xinyu Yuan, Hesham Mostafa, Jian Tang, Zhaocheng Zhu

NeurIPS 2023 A*Net: A Scalable Path-Based Reasoning Approach for Knowledge Graphs Zhaocheng Zhu, Xinyu Yuan, Michael Galkin, Louis-Pascal Xhonneux, Ming Zhang, Maxime Gazeau, Jian Tang

ICML 2023 ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts Minghao Xu, Xinyu Yuan, Santiago Miret, Jian Tang

NeurIPSW 2023 Towards Foundation Models for Knowledge Graph Reasoning Mikhail Galkin, Xinyu Yuan, Hesham Mostafa, Jian Tang, Zhaocheng Zhu

CVPRW 2019 Anomaly Candidate Identification and Starting Time Estimation of Vehicles from Traffic Videos Gaoang Wang, Xinyu Yuan, Aotian Zheng, Hung-Min Hsu, Jenq-Neng Hwang